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Vol 42(2008) N 2 p. 270-276; Yu.S. Khairulina, M.V. Molotkov, K.N. Bulygin, D.M. Graifer, A.G. Ven'yaminova, G.G. Karpova The C-terminal fragment of ribosomal protein S15 is located in the decoding site of the human ribosome Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, RussiaReceived - 2007-07-06; Accepted - 2007-07-20 Protein S15 is a characteristic component of the mammalian 80S ribosome that neighbors the mRNA codon at the decoding site and the downstream triplets. The S15 fragment juxtaposed in the human ribosome to mRNA nucleotides +4 to +12 relative to the first nucleotide of the P-site codon was determined. S15 was modified using a set of mRNA analogs containing the triplet UUU/UUC at the 5' end and a perfluorophenyl azide-carrying uridine at various positions downstream of this triplet. The mRNA analogs were positioned on the ribosome with the use of tRNAPhe, cognate to the UUU/UUC triplet, targeted to the P site. Modified S15 was isolated from complexes of 80S ribosomes with tRNAPhe and the mRNA analogs after irradiation with mild UV light and hydrolyzed with cyanogen bromide, cleaving the polypeptide chain after Met residues. Analysis of the modified oligopeptides resulting from hydrolysis demonstrated that the crosslinking site was in C-terminal fragment 111-145 of S15 in all cases, suggesting the involvement of this fragment in the decoding site of the eukaryotic ribosome. Ribosome, photoaffinity crosslinking, eukaryotes, mRNA analog, decoding site, ribosomal protein S15 |